rs27168342 SNP Detail

Summary

• ID
  rs27168342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:35446854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCTGGGA GCCGCTAGGT
  AGCAGCTGGG ATAGACTGTA TGGATGCCGC TAGCTCAGCA TCACCCTGGT CCAAGCCAGT
  GCAAGCCCAT ACCATGGACT TAGGGCAGAA AAAACTTGAT CTGAGTCCTG TAGACGTATG
  TCCCCCATCC CTCTCCTCTT GATCTCTCTA CCCAACTCCA CAGCCATTCC TCCAAAAAAG
  Y
  AGGCCAATGA CGGCTCGGAT CTCAGCGTTC AGCTAGGCAG AGGGCCAAAG GTATCTCTTC
  TTCAGCAGGC AGCACTGTGT GTTGGGGAGG TTGGGAAAGG GCTGCTCAAA GGGACACCCA
  GGCACCCCTT GGAAAGGAGG TCAGCCTCTG TCTGAACAGA TGCTTCCTGT GGCCCCTGGA
  GCAAGCCTGC ACTCCAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37392165	NES08728951	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27168342					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37392165	NES08728951	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:35446854 () rs orientation: forward

Symbol	Name	Function Class
Dab2ip	disabled 2 interacting protein	1431 bp upstream
Gm13446	predicted gene 13446	within coordinates
Rr373036	regulatory region 373036	257 bp upstream
Rr555707	regulatory region 555707	1130 bp proximal
Rr555708	regulatory region 555708	1435 bp proximal
Rr555709	regulatory region 555709	1850 bp proximal
Tssr17474	transcription start site region 17474	1610 bp upstream