rs27168866 SNP Detail

Summary

• ID
  rs27168866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:34921364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAAGTGA GAGTTCAAAC
  AAATGCAGTG ATTTCCCCAT CCCCTCTCCG GGATCTTTGC GCTACTTTTG TAACTACTGT
  CACCCCTGAG CCAGATCTTC CATCTTAGAC CTCAGCTGAG GACGGTAGCT CTCATAGTTC
  CATCTGCTTA TGATGTTGGT GTCTACACTT GGAAGAGCCC AAAATGGTGG ATGACCCGTG
  Y
  TTTAGGGACA GAAGAAACTC TTTGTTGAAT GTACTGTAGA AAAGGAGGCC AGGGCCTCTA
  TGATGGCTTG TATATGCTCA GCCCAGGGAG TGGCACTACT AAGAGGTGTG GCCTTGTTGG
  AGTAGGTGTG TCACTGTGCG AGTGAGCTAT AAGACCCTAG TCCTAGCTGC CTGGAAGCCA
  GTATTCTGTT AGCAGCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37393485	NES08734207	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27168866					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37393485	NES08734207	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34921364 () rs orientation: forward

Symbol	Name	Function Class
Hc	hemolytic complement	within coordinates
Tssr23683	transcription start site region 23683	971 bp upstream