rs27170623 SNP Detail

Summary

• ID
  rs27170623
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34177238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAGCCGT TCATTTGATT
  TTCCATTTCA ATTACGGATT GCACGAGGCA AAAGGAAAAA GATTGCATCA TTGATTTTTC
  TACCTTACAA CAGTACAGAG TTGCTTTGAT GGTTATAAAA TGAATGCAAC TCAACCATGC
  TTTTAAAGGT CATATTTTTT TGTCTTAGTG TATTTTTTCA AAGCTTAACA TATGCAACTG
  K
  GCACATGCTA TAAGGAAAAA CTATCCTCAA AACCAAGCTA AGCTATTGCT CAGGTGAGGG
  AAAAAAATTT TAAGTAAAAA TGCTTCAGAT GGGCCGATCA TTCTGCAGTT GTATCCACAT
  TGCACAGTAA AGCACTTTTG GGAAAACCTA CTGGTAGGGA ATTTGCATGG TTTTCTAAAA
  GATCTGGGTT CAGAAAATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37395442	NES08750030	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27170623					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37395442	NES08750030	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34177238 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C79798	expressed sequence C79798			545 bp upstream
Pbx3	pre B cell leukemia homeobox 3			Intron
				Noncoding-Transcript-Variant
Rr555449	regulatory region 555449			399 bp proximal
Rr555450	regulatory region 555450			556 bp proximal
Rr555451	regulatory region 555451			1337 bp proximal