rs27170624 SNP Detail

Summary

• ID
  rs27170624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34176027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGAAACA AACAATAACA
  ACAAAAAAGG CGGGAGAGAA ATATATTTTA GATTTACTTC AAGAGATAGG AAAACAAAAA
  AGGCAAAGGA GGTGACAATG GGACATGATT GGTCATGAAA GTTTAGGGAT CCAATGTCTT
  ATCTTCTGTG GCATGGCTCA AAAGTCACAT TAGCCAAAAT TTAACACAGA GAAGAAGAAA
  R
  ACAGCGTGTA TTACTACTGT GATTTTATAT GCATGTATAT ACATACATGT ATATGCATAT
  GTATATGTGT ATGTGTGTAT CTTTACAAAG ATCCCTAGTT CTTCAGTATT AATCTAATAC
  TTGCAGATAA ACATATTAAG GTTTTATGAA TACTTTTTCT AAAACATATC AATGTACACT
  CCTATAAGCA ATGTACACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37395443	NES08750029	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27170624					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37395443	NES08750029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34176027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C79798	expressed sequence C79798			1756 bp upstream
Pbx3	pre B cell leukemia homeobox 3			Intron
				Noncoding-Transcript-Variant
Rr555449	regulatory region 555449			1610 bp proximal
Rr555450	regulatory region 555450			1767 bp proximal