rs27171135 SNP Detail

Summary

• ID
  rs27171135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32863471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTTAGGA CCGGGCACCC
  CAGCCAGGAA ACGGGAGCCA GGAGCCCTCA GGTCCCTTCA GCTGCCTCAG TCTTAAGAAG
  GAGACACCTG GGTCAGGTGA GGATGCACAG CTCCTCAGAT GTCCTGTGTG TGAAGCAGGC
  TGCAGAGACC GCACTCAGAG TCTGGTGGGC CTCACGGTGG GAATCTGGGT TGAGATCTGG
  R
  CAAAGAGGGC CCTGAGGTGA GGAGTCAGGG GGCCTCCAGG CTCAAACTGA GGTGTGGCTT
  AGTTACAGGC CACTCCACTC CTTCTGAAAC CCAAAGGCAG CTCAGCTCGG GGCTCCCAGG
  CACAGAAAGG GTCTGTCATC GTCCCTCGAA ATGGGCTGTG ACTTGTTCCA GAGTCCTGCC
  TTTAGTCTCA GGGACAACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398657	NES08750825	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27171135					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398657	NES08750825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32863471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr555133	regulatory region 555133			1894 bp distal
Slc2a8	solute carrier family 2, (facilitated glucose transporter), member 8			mRNA-UTR
				Noncoding-Transcript-Variant