rs27171138 SNP Detail

Summary

• ID
  rs27171138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32861516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGCATTA TCCCCCCCCA
  CACACAAAAG TAAAAAGCAG AAAATAAAAA TGGCAGCCAA TGGCTGGGGG ACACAGCGTG
  GTGCCGGGAG TGTTTGGCTA GTTAGCACAC GCTGGGCTCT GAGCCCAGTT GCCAGTGATG
  GGAAGAAAAA CACAGCAGGA GACCAAGCAC ATGGGAGTGG CAGTAAGAGA ACGCCTTTCC
  Y
  GGCTTTGCGG ACAGTCATCT CCCTCACACC TGGACTGAGA CACCGCTACA ATCCTGACCG
  GTGATTGTTC TGTGAAGATT TCAGCAAATT TATTTATTTA TTTATTTATT TATTTATTTA
  ATATGCGTAC GCTGTAGCTG TCTTCAGACA CTCGGTTTCA GCAAATTAAT TAATTAATTA
  GTTAATTAAT TATTATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37398660	NES08750875	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27171138					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37398660	NES08750875	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32861516 () rs orientation: forward

Symbol	Name	Function Class
Rr555132	regulatory region 555132	1670 bp distal
Rr555133	regulatory region 555133	within coordinates
Slc2a8	solute carrier family 2, (facilitated glucose transporter), member 8	1486 bp downstream