rs27173362 SNP Detail

Summary

• ID
  rs27173362
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33789569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACACAG ATAACCCGCA
  CATGTGCACA TATACCCACA CCATACATAC CAGGTTATAC GATATGACGT ACTTAGCATA
  TAAAGCCATC AGTTTTACAT GTAGTTGTAT TTATTTATAA ATATTCTGTT ATGCATAAAG
  ATACTTAGGC CAAACATTAA TTTTTAACTT CACCTTTCTC TTAGAGATGG GTCTACACAC
  W
  AAGCATCATT TCTAATTTAA GGTATTCATC TCACTTAGAA ATATAGATGC ATGTGTTTGA
  CGAGACACCA GGCATCTTCT TTCAGTGGCC TTATGTGGGA ACAGAACCAT TAAGAACACT
  CATCCTGGGG GGGTTGACCA AAATGGCCAC ATGAGCATGC CCCACTTCAA GGGAGGTTGG
  GAAATTTGCT TCAACAGTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37396482	NES08755883	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27173362					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37396482	NES08755883	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33789569 () rs orientation: forward

Symbol	Name	Function Class
D2Mit203	DNA segment, Chr 2, Massachusetts Institute of Technology 203	397 bp proximal
Gm39792	predicted gene, 39792	within coordinates