rs27176640 SNP Detail

Summary

• ID
  rs27176640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30520908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTCTCAG CACCCAGGAG
  GGGCAGCTCC CTGGAACTCC AGCCCCAGGG GTTCAGCCAC CTGCTTCTGG CCTCTGTGGG
  CACCAGCATA TGTGCATACA CACAAGGTTT TCTAAACATG GGAAATCAGT GCTGCTTTGA
  TGATTTCCTA CTGGGTGGGG GGAGCTTCCC TTTTCGGTTG CATATTTAAT AGAAGTATCT
  R
  GGTGTAGACT CCTCTGGTTT GTCCCTTTGG GAGGAGACAC TCCTATCACA ACCCTAAGGA
  CTGGATCCAG GGTGGCAAGC ATGCCAGGCG GGTGTTCTAC CAAGGAGCCA CAGTCCCAGG
  CTCTGTGCAA TTCATAAATC TGAGAAATGT TTTTCACCAA TTCTGGAATG TTCTCAGACA
  ACATCACATC AAATATGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404459	NES08759086	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176640					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404459	NES08759086	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30520908 () rs orientation: forward

Symbol	Name	Function Class
9330198N18Rik	RIKEN cDNA 9330198N18 gene	within coordinates
Gm75405	predicted gene, 75405	1011 bp upstream
Rr554377	regulatory region 554377	1231 bp distal
Rr554378	regulatory region 554378	1074 bp distal
Tssr23386	transcription start site region 23386	1001 bp upstream