rs27176643 SNP Detail

Summary

• ID
  rs27176643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30518616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGCCTGT ACACGGTGGC
  GAGATTGAGC TGGGTCCTGT CTCTATCACT ATCACGCTCC GGAGTGTTTT ATTTCTACTC
  TGCTCCAAGC CAGCATCTGT CACTTCGGCT GCCATTCTCC CTCAGATGTG AGTCATGCTT
  TGCTGTCTTT GCCCGTGACC GCTTACATGT CACACTTGAT GCTGGCCCGC AGCTTCTCTG
  W
  CATCTTTCAC CCATTCTGTC TGCCAAGATC CACAAGCACT GATGCTCTTT AGTCTATCAG
  AATTCAGAAT GTTGCTTTTG CCTCCATTCC CTGGAGTGTG TGTGTGTGTG TGTGTGCGCG
  CGCGCGCACG CTCGTACGTA CAGGTCAGAG GTTAACACTG GACACCTTCT TCTGTTGCTC
  TCTGTCTTAC TTCCTCGAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404462	NES08759166	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176643					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404462	NES08759166	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30518616 () rs orientation: forward

Symbol	Name	Function Class
9330198N18Rik	RIKEN cDNA 9330198N18 gene	within coordinates
Gm75405	predicted gene, 75405	662 bp downstream
Rr554375	regulatory region 554375	1909 bp distal
Rr554376	regulatory region 554376	551 bp distal
Rr554377	regulatory region 554377	561 bp proximal
Rr554378	regulatory region 554378	1062 bp proximal
Tssr23386	transcription start site region 23386	1287 bp downstream