rs27176646 SNP Detail

Summary

• ID
  rs27176646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30518342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGCAGGG TCTCATATAG
  TCCAAGACAT CTTCAAACTC ACTATGTAGC CACAGGTGAC CCTGAACTTC CGATCCTCCA
  CAGTACTGGA ATTACAGGTT ATGTACCCCC ATGCTGGGTT CCTGTGGTAC TGAGATTCAA
  GCCCAGGGAT CCATGACTTC TTGGCAAGTA GTCTCCCAAC TGAGCTATCT CTACTACCCT
  Y
  GATATTACTT CCTAGTTCTT TCTGGGCTTG ATTGACTTCA ATAATAATCT GAGCCAGTAC
  TTTTTGTGTG CTTTCCCGCC TGTACACGGT GGCGAGATTG AGCTGGGTCC TGTCTCTATC
  ACTATCACGC TCCGGAGTGT TTTATTTCTA CTCTGCTCCA AGCCAGCATC TGTCACTTCG
  GCTGCCATTC TCCCTCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404465	NES08759157	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176646					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404465	NES08759157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30518342 () rs orientation: forward

Symbol	Name	Function Class
9330198N18Rik	RIKEN cDNA 9330198N18 gene	within coordinates
Gm75405	predicted gene, 75405	936 bp downstream
Rr554375	regulatory region 554375	1635 bp distal
Rr554376	regulatory region 554376	277 bp distal
Rr554377	regulatory region 554377	835 bp proximal
Rr554378	regulatory region 554378	1336 bp proximal
Tssr23386	transcription start site region 23386	1561 bp downstream