rs27176648 SNP Detail

Summary

• ID
  rs27176648
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30515518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGGTAG CTAGCAGAAG
  CCACCAGGAC ACTTATAACT CACCTTCTAG TGTCCTCTGT CTCTCAACAC ACCTTGAGGT
  CTAAGACTTT CAAGTTCAAC TTTGAGTGTC TTTGACATCC CTAGTCTATG ATTAACGTGA
  GGTGATGCTG TCATAGTGCC TCAGTAATGA CAGCTATGAC TCTTGTGACT TTGCCAGCTG
  S
  TACCACACTT TTCAGATGGG TGAGGCAGGG CTGTATTGTT ACCTATCTCC ATTCAAACAA
  GGCTCAAAGT AGTAGATGCG GTTAGCATTT TATGGCTGGT GTGAGGCTGT GGCAGTTGGT
  GTTGACTGCC AGTCTGACAG AATCTAGACT CTCCTAGAGA TGGGTCCCTG AGCATGCCTG
  TGGAAGATTA CCGTGAGTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37404467	NES08759235	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27176648					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404467	NES08759235	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30515518 () rs orientation: forward

Symbol	Name	Function Class
9330198N18Rik	RIKEN cDNA 9330198N18 gene	92 bp upstream
Rr554374	regulatory region 554374	1351 bp distal
Rr554375	regulatory region 554375	within coordinates