rs27176649 SNP Detail

Summary

• ID
  rs27176649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30515517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAGGTA GCTAGCAGAA
  GCCACCAGGA CACTTATAAC TCACCTTCTA GTGTCCTCTG TCTCTCAACA CACCTTGAGG
  TCTAAGACTT TCAAGTTCAA CTTTGAGTGT CTTTGACATC CCTAGTCTAT GATTAACGTG
  AGGTGATGCT GTCATAGTGC CTCAGTAATG ACAGCTATGA CTCTTGTGAC TTTGCCAGCT
  R
  CTACCACACT TTTCAGATGG GTGAGGCAGG GCTGTATTGT TACCTATCTC CATTCAAACA
  AGGCTCAAAG TAGTAGATGC GGTTAGCATT TTATGGCTGG TGTGAGGCTG TGGCAGTTGG
  TGTTGACTGC CAGTCTGACA GAATCTAGAC TCTCCTAGAG ATGGGTCCCT GAGCATGCCT
  GTGGAAGATT ACCGTGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404468	NES08759234	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176649					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404468	NES08759234	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30515517 () rs orientation: forward

Symbol	Name	Function Class
9330198N18Rik	RIKEN cDNA 9330198N18 gene	93 bp upstream
Rr554374	regulatory region 554374	1350 bp distal
Rr554375	regulatory region 554375	within coordinates