rs27176653 SNP Detail

Summary

• ID
  rs27176653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30514530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAACAA AAATATAAGT
  TGAGTTTTAG GGGAATACAA CTGGACAGGA CATGTTAGCG GGAAATACAG GCATGACCCA
  AAGGTCAGAG GAAGAAACAG GAAATCTTAT CACCACAAAT AAAACCACAG GAGAAGGACA
  CATTCGCTGA AAAATACTGG CTCTGATCCT TCTTCTAGCA AGTTCTTCCT GTTTGATTCA
  R
  GGCATCAAGG GTTAAATGCT GCTTTGTTGG TGTTAAAAAA GTATAGTGCT GGGCAGTGGT
  GGCACATGAC TTTAATTCCA GCACTTGGGA GGCAGAGGCA GGTGAATTTC TGAGTTTGAG
  GCTAGCCTGG TCTACAGAGT GAGTTCCAGG ACATCCAGGG CTACACAGAG AAACCCTGTC
  TCGAAAAACC AAAAAAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404472	NES08759252	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176653					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404472	NES08759252	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30514530 () rs orientation: forward

Symbol	Name	Function Class
9330198N18Rik	RIKEN cDNA 9330198N18 gene	1080 bp upstream
Rr554374	regulatory region 554374	363 bp distal
Rr554375	regulatory region 554375	767 bp proximal