rs27176690 SNP Detail

Summary

• ID
  rs27176690
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30494103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGTTCCTG TGACTACCAA CACTGAGGCT GGAGGGCATG
  CTGGCTTCCT CCCTGACCAG CCTGTACAGG GTAGGGGCCT GGGCCAGTCG CTCTCGCTCT
  S
  GAACTCAAGT TTCCTTCAAG ACTCCAGGAG GCTGTGTGCC TCAGGGCTCT CGGCTCTCTC
  GGCACTTGCT AACATCTTCC TGTGTCTCCA TGGTGCATCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	PWD/PhJ
ss37404509	NES08759856	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	KK/HlJ	PWD/PhJ
rs27176690					SNP	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404509	NES08759856	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30494103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11442	CpG island 11442	887 bp proximal
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
D2Dcr46	DNA Segment, Chr 2, Derry C. Roopenian 46	1616 bp distal
D2Mit33	DNA segment, Chr 2, Massachusetts Institute of Technology 33	1603 bp distal
Gm74685	predicted gene, 74685	1831 bp upstream
Rr554366	regulatory region 554366	1959 bp distal
Rr554367	regulatory region 554367	within coordinates
Rr554368	regulatory region 554368	1341 bp proximal
Rr554369	regulatory region 554369	1842 bp proximal