rs27176696 SNP Detail

Summary

• ID
  rs27176696
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30491458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGATGGGG ACTCCAGGAT GCATGGTGGG ATACCAGAAA
  ACACCCTTCT CCCCAAGGGG GCAGAGTCAA GACAAGACCT CAGGAGATCA CGTGACAGTT
  R
  GGCTGTGTGT CCCAAAGGAT TCTGGTGGCA GAGCCCCAGA GCTTCTGAGG AACACAGAGC
  TGCGGGACAG CTCCCCTGCC CAGAGGGTGC TGCTCACACA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37404515	NES08759960	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27176696					SNP	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404515	NES08759960	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30491458 () rs orientation: forward

Symbol	Name	Function Class
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
D2Dcr46	DNA Segment, Chr 2, Derry C. Roopenian 46	901 bp proximal
D2Mit33	DNA segment, Chr 2, Massachusetts Institute of Technology 33	863 bp proximal
Rr554365	regulatory region 554365	1492 bp distal
Rr554366	regulatory region 554366	within coordinates