rs27176697 SNP Detail

Summary

• ID
  rs27176697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30490576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATAGAG TCTCCAGTAG
  CCCAGCCTCT AGTTCACAGT GTTGCTGGAC TGACCTTAAG CTCCTCCCCC GCCTGCTCCA
  CCTCCCGAGT GCCCGGCTTT GCCCTGCCCT GGTGTGGGGC GCAGGTCTTT ACTGCTGTCG
  GTGCAGCTAC AGTACCACTC ATTTGGGTGT CTCCCCTTCC CAGCCTGTCT CACCACGACC
  Y
  TTCTATGGCT ATCCATGATG AGTGAGGGAA GCAGAGAGAA AACAGAGGCA TGCAACCGCC
  TCTCAGGAAA TGTAACTGGG CGCCCCTGGT AGAGGCTGAG CCGGGACAGA TTGCCTAGGA
  GGGGAGAGGC ACCTTCAGCC AGCCTTTCCA AGGCTCATGC CGGCCCTCCC CAACTTTTTT
  TTGGTGTGCC TCGGGTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404516	NES08759959	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176697					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404516	NES08759959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30490576 () rs orientation: forward

Symbol	Name	Function Class
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
D2Dcr46	DNA Segment, Chr 2, Derry C. Roopenian 46	1783 bp proximal
D2Mit33	DNA segment, Chr 2, Massachusetts Institute of Technology 33	1745 bp proximal
Rr554365	regulatory region 554365	610 bp distal
Rr554366	regulatory region 554366	within coordinates