rs27176699 SNP Detail

Summary

• ID
  rs27176699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30490125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGACCAG CACAGATGTC TTACCAGAAA GCTCCCTAGA
  CTAGGTACCA CTAGAATGAG CCATTAGGTG GAGAGAGGCA CACAACTTCT CCACAGTCTC
  Y
  ATGGCTACCC ATCTAGGACG CCTTCCCTCA GCAGGTTTCA GGGAAACCCT GCAGGGTCCT
  TCTCAATACT ACTTGCTGCT GTTTGACCTT CATAGATGAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404518	NES08759977	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176699					SNP	T	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404518	NES08759977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30490125 () rs orientation: forward

Symbol	Name	Function Class
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
Rr554365	regulatory region 554365	159 bp distal
Rr554366	regulatory region 554366	188 bp proximal