rs27176701 SNP Detail

Summary

• ID
  rs27176701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30489850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAACCAGC TGGCCAGGCT
  GGCCAGCCAT CTCTAGGTAT CCTCCTGCCT CAGCTTCCCA GAGCTGAGAT CATAGCTGTG
  TACACTGCCA TGCTTGGGTT TTCCCCTGAA CACACGTGCA GTAGACTCTT GGCTGGTTTT
  CTCTTCCTTG GATTCTGTCC AGCTGTGCTC TGCCTCTAGC AGCCCCAAGG TAGGCTCATC
  Y
  TCATCTGGGA GGAGTCAAGG GCTGAGTTAC CGTCCCCCAC TCCCCCCACC CCTGCACCCT
  CTCTCAGCTT AGCTCCTCCT AGAGGAGGCT CAGACACAGT TGCTACCATG CTAAAAAACA
  AAACAAGCAC AACCCTAGTC GGGAAGGTAT AGCCACCACA GGGTCTCTGA GAGGATGTGA
  CCAGCACAGA TGTCTTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404520	NES08759975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176701					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404520	NES08759975	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30489850 () rs orientation: forward

Symbol	Name	Function Class
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
Rr554365	regulatory region 554365	within coordinates
Rr554366	regulatory region 554366	463 bp proximal