rs27176703 SNP Detail

Summary

• ID
  rs27176703
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30488698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAATCAG GGAGGGTAAA
  CCCTCTACCT GCCCAGTTTG GCCTCACAAT GTCCCTGGGG AGTGTAGTGA TGGGGACTTC
  CATGTCCCAG GCTTGGAGGA CCAGCACATG CCACTGTAAA GGTCCTACTG TGTGAGAGCT
  GAGGCTGATG TGCTCCAGCC CTGCCCCTCT GCTGCAGACT TCAGCCCTGA GCTTGGCAGG
  R
  AACAGCACTG GAGTTTGGAG TTCCAGCCCC TGGTGCTGAC TGAGGCTTGG GCTATAAACA
  GGAACTAGGC ATGCCTCTGC CCTAGAAGAG GTCTTTCCTG GGAGCAGAGA CTGGCTGGAG
  AAAAGGCTTA GTGGTTGAGA GACTTGCAGA GGATTCGGGT TCTGTTCCCA GCACCCACAG
  CAGGCAGCTC ACAACCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37404522	NES08760008	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27176703					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37404522	NES08760008	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30488698 () rs orientation: forward

Symbol	Name	Function Class
Cstad	CSA-conditional, T cell activation-dependent protein	Intron
Rr554365	regulatory region 554365	1014 bp proximal
Rr554366	regulatory region 554366	1615 bp proximal