rs27177028 SNP Detail

Summary

• ID
  rs27177028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31590774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGGAAA CACAAGCATC
  AGCTAGTGGT GGCTCTTTGT GCCCAGTTGA CTTGCCTGGA AACCCCCATT GTCACCTGCT
  TGGGAGAGTA GTTATTGCCT GGACTGTGTG GGCTGTGTTC CTGCGGTAGG GTCATTGTTA
  AGCAGAGCAC ACTCCCACGT GGTTCAGCAG TGCCTTTATC TCCTTTTGCT GATTATTGAG
  Y
  GCTAGTGGCT TAGTCAGACA GCTCCCAGGT TTGCCCTGAT ATGGTAGTTC CTCTGACCTT
  GAAGAACTCC TGATCTTTAC CTCCAGCTGC TTATGGCCTC TCTGTGTGAT GGACATTTGA
  GCAGGAGCCT GTGTTTCTGG TTGTCTGTGC CCCTCCACTG CCACTGCCTC ACATCCCTTA
  CTCCAAGGAG CTCCCCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37401547	NES08753500	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177028					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37401547	NES08753500	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31590774 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abl1	c-abl oncogene 1, non-receptor tyrosine kinase			Intron
				Noncoding-Transcript-Variant
Gm57832	predicted gene, 57832			within coordinates
Rr554696	regulatory region 554696			within coordinates