rs27177080 SNP Detail

Summary

• ID
  rs27177080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31562347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCCGTGT CCTGGTGGAG
  GTTAAGATAT AGCAAGGAAC AGAAACAGTA AATGCCACAA GAAAATCGTA AATGCAGCGG
  AAGGGGGAGA ACAGGTGTGT AGTTGGGAAT GGGGTGGACC AGGAGCAGTT GGGGATCCCT
  GTGCTGCCTG GGATGTGGAG GTAGGATGTT AGGCAGTGAC ATTTGAGCAC ATTACTTTAA
  R
  ATGGAGACGT CCATGTGACT GTCTGCGGAG AGTGTGAGGC TCAGGGCTGG GGGAGCCCGT
  TAGGTTCAAG AACTATGTTC TAGATCACCT CCAATGTATC CTGGTATCCT TTCTTTGTGG
  CCTTGTCCTT GCGCAGGGGC CATGGGACAT ACATGGGGGA AGAGAAGCTC ATTGCGTCTG
  TGGCCGGCTC TGTGGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37401600	NES08753997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177080					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37401600	NES08753997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31562347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11482	CpG island 11482	1255 bp distal
Exosc2	exosome component 2	within coordinates
Rr396882	regulatory region 396882	1506 bp downstream
Rr554683	regulatory region 554683	1610 bp distal
Tssr17210	transcription start site region 17210	1594 bp downstream