rs27177085 SNP Detail

Summary

• ID
  rs27177085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31559721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCCAGAA CTAGACCTAG
  GTTAGCAAAC AAAGACAGTA AACCTCCCAG TCAACAATTA CAACAGGAAA ATAAAAGTTA
  CATTTATGCC TCCCTACAGA CTTGCTTGTC ACATGACTGT TTACAACAGT CATCTTTCAG
  CAGACACATG TCATCACTCA GAAGAGGTCC TTACTAAAGC ACATTAGAGC CATAGGGCAG
  Y
  AGGTGAGGAC AGCACCTAAG GGGCTAGAAG ACAAGGCCCA CGAGGAGCAG TATTCAGAGG
  GTTCTAGCTT CTCCTCAGAT GGTGTTTCCT GTAAATCCCG GTCCTAAATC TATAGTCTAC
  AAAATATTAG ATTATAGTGG TTTTGAGTTG GATGCCAAGG TTCATTTCTC AATCTCTAGA
  CTTGCCAACA ATAAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37401605	NES08754040	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177085					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37401605	NES08754040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31559721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11482	CpG island 11482	889 bp proximal
Exosc2	exosome component 2	1006 bp upstream
Rr396882	regulatory region 396882	819 bp upstream
Rr554683	regulatory region 554683	533 bp proximal
Tssr17210	transcription start site region 17210	1005 bp upstream