rs27177260 SNP Detail

Summary

• ID
  rs27177260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32083323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGACCC TTACAAAAAA
  GAAAGCCAGA TTGAACGGGC TCAAGAAGCT GTCAGGTTTT TACGTTTTTC AGACATTTCT
  TTTGTGTGTG TTTGTCAGGT AGGGAGCACA CTTACTGTAG CATGCATGTG GAGGTCAGAG
  GGCAGCTTGT GGGAGTTAGT TCTTCCCTTT TGCCACAGCA GTCCTGGGTC ATCAGCTTGA
  Y
  AGCAGCCCAC AAAAACACAT CACCCGCTCA TCCTCGGGTT TTTACCTGTG AACTGAGCGT
  GTGCTCTGTG TATACCACAT GTGGTCACAG GGTACCGATG TTCCAAACAG AGGCTCATGT
  GGACAGTCGC ACAAGCCTTG GTGGGTGGGG TAGTGCTGGC TGAAGGAGTG AGTCAGGCTG
  TCCTGGTGTC CCTGTGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss37400481	NES08751477	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs27177260					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400481	NES08751477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32083323 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr554844	regulatory region 554844	1133 bp distal
Rr554845	regulatory region 554845	1222 bp distal
Tssr17252	transcription start site region 17252	630 bp upstream