rs27177261 SNP Detail

Summary

• ID
  rs27177261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32082494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTAAAG GCGTGCGCCA
  CCACCGCCCG GCCCGTGAGG GTTTTTAAGA ACTGGATTTT CTGTCAGGCC TGATCAAGGA
  AGCTGAACTT GTTCAGCTCT TGAATTCAAG GATCTGCCCG TATTGTTCGG TCCCGAGGCC
  TCTTCTGTTG ATGGTACTGA CGGCAAGTCG GAGGCACAGT CCTGAAGCCA AGTGAACACC
  R
  TGCCACTCTG GCAAAACAGC CACTTTGCCC AATGTGCACA GTGCTGAAAG GGCTGGTCAA
  TGTTAGGGGA GCCCTGCTGT GGCTGAGATG GGTCACCCTG GGGGCTAAAG TGTGGAAACA
  GAACCAGCTT CTAGATTGTT CCCTCTCCTG AGGTGAGAAG CAAATGGCCT GAGGGTGTTC
  CTGGCTTCAT GGCCTCCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss37400482	NES08751523	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs27177261					SNP	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400482	NES08751523	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32082494 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr554843	regulatory region 554843	1666 bp distal
Rr554844	regulatory region 554844	304 bp distal
Rr554845	regulatory region 554845	393 bp distal
Tssr17252	transcription start site region 17252	1459 bp upstream