rs27177262 SNP Detail

Summary

• ID
  rs27177262
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32082442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGCTGG CCTCGAACTC
  AGAAATCCAC CTGTCTCCGC CTCCCAAGTG CTGGGATTAA AGGCGTGCGC CACCACCGCC
  CGGCCCGTGA GGGTTTTTAA GAACTGGATT TTCTGTCAGG CCTGATCAAG GAAGCTGAAC
  TTGTTCAGCT CTTGAATTCA AGGATCTGCC CGTATTGTTC GGTCCCGAGG CCTCTTCTGT
  W
  GATGGTACTG ACGGCAAGTC GGAGGCACAG TCCTGAAGCC AAGTGAACAC CATGCCACTC
  TGGCAAAACA GCCACTTTGC CCAATGTGCA CAGTGCTGAA AGGGCTGGTC AATGTTAGGG
  GAGCCCTGCT GTGGCTGAGA TGGGTCACCC TGGGGGCTAA AGTGTGGAAA CAGAACCAGC
  TTCTAGATTG TTCCCTCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss37400483	NES08751522	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs27177262					SNP	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400483	NES08751522	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32082442 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr554843	regulatory region 554843	1614 bp distal
Rr554844	regulatory region 554844	252 bp distal
Rr554845	regulatory region 554845	341 bp distal
Tssr17252	transcription start site region 17252	1511 bp upstream