rs27177264 SNP Detail

Summary

• ID
  rs27177264
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32081153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGTATTG TACTGAAAAC
  CTAGGGGTGT GGCTATAACA GGGCAGTGGT ATCCCTCAGT TCAGTAGTGT GGTACACAGC
  ATGGGCTGAG AGAGCACTAG TCCTTAAAGG CCATTCTCCT CTGTTAATCC AGGAAGAGAT
  GGGATCTGTG TGTCAGGAGT GGAGTTACAA TGTTAAAACA GGGCTGTTCC TTCCAAGGGG
  K
  TTCTGGTTGA GCAGTGAGTG ACTGCTGAAG AGAGAAATGG TCTTGGGGTT ACATCAGGAC
  CACACTTGGC TTGGCAGGGC TGGAGAAGGT TGGGAGGTGA GTCTCAGAAC TCACTGGCCA
  CAGCTTTGTG GGGTGTCTGA TGCTGCCCCT CATGAAGCAG TCTTACTACC CTAAGCAGAC
  GCCAAGTACC CGGTGATTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss37400485	NES08751545	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs27177264					SNP	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400485	NES08751545	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32081153 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr554843	regulatory region 554843	325 bp distal
Rr554844	regulatory region 554844	652 bp proximal
Rr554845	regulatory region 554845	927 bp proximal