rs27177289 SNP Detail

Summary

• ID
  rs27177289
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32071785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTCCA TCCACACAGA
  TGTGACATCA GTGGCTCTGT CTCAGCTTTT GTTTTGTGTG CCTGTTGTAA TTGAGTGTTG
  CTTCTCGTGC TCCCTAGTCT GAGGTCATGG CGTACGGATC TGTCTTAGGC ACCATCTTAC
  TGGGTGCCAG ATGCCTCCCA GAAACACTGA TGTATTCTAG CGCAGGTAGC TTTAGGACAG
  W
  CTCACAGGGC TGCAGATTCA CTATGACAGC TGCCTCCCTC TCCCTTTTCT TAGTCACCCC
  GTGAGGCCAT TAAGGACATG TGACTGTGAG ACTCGGTGGA TACGCTTGCT TTGTGTTCCA
  TACTTTGCTC CCAGGGTTAG GAAGTCATGG TCTTTGTACA GGTTTCAAGT TGAGCGTCTC
  TAGTTAAGGC TGATGTAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400510	NES08751727	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177289					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400510	NES08751727	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32071785 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	within coordinates
Rr367166	regulatory region 367166	122 bp downstream
Tssr17251	transcription start site region 17251	1250 bp upstream