rs27177290 SNP Detail

Summary

• ID
  rs27177290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32071718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCAGCCC TTGGCCAGGC
  CTGCTTTGTG CCAGAGCTGA CACCTGCGCC TTTGATGTGT CAGGAGACTG GGCTCCATCC
  ACACAGATGT GACATCAGTG GCTCTGTCTC AGCTTTTGTT TTGTGTGCCT GTTGTAATTG
  AGTGTTGCTT CTCGTGCTCC CTAGTCTGAG GTCATGGCGT ACGGATCTGT CTTAGGCACC
  R
  TCTTACTGGG TGCCAGATGC CTCCCAGAAA CACTGATGTA TTCTAGCGCA GGTAGCTTTA
  GGACAGTCTC ACAGGGCTGC AGATTCACTA TGACAGCTGC CTCCCTCTCC CTTTTCTTAG
  TCACCCCGTG AGGCCATTAA GGACATGTGA CTGTGAGACT CGGTGGATAC GCTTGCTTTG
  TGTTCCATAC TTTGCTCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37400511	NES08751724	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27177290					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400511	NES08751724	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32071718 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	within coordinates
Rr367166	regulatory region 367166	55 bp downstream
Rr554840	regulatory region 554840	1831 bp distal
Rr554841	regulatory region 554841	687 bp distal
Rr554842	regulatory region 554842	within coordinates
Tssr17251	transcription start site region 17251	1317 bp upstream