rs27177291 SNP Detail

Summary

• ID
  rs27177291
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32071548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGATTT TCAAGGCAGA
  GTTTTACTAT GTAGTTCTGG TTGTCCTGGA ACTCACAGAG TTCCACCTGC CTGTCCTTGA
  TGGCTGGGAT TAAAGGTGTG CACCACCACC TCCTGCCTCA CATGCAGGCC TTCAGGGCAT
  TTCCTGGTAC ACATTGTGCA TTCACACACT CTTGCAGCCC TTGGCCAGGC CTGCTTTGTG
  M
  CAGAGCTGAC ACCTGCGCCT TTGATGTGTC AGGAGACTGG GCTCCATCCA CACAGATGTG
  ACATCAGTGG CTCTGTCTCA GCTTTTGTTT TGTGTGCCTG TTGTAATTGA GTGTTGCTTC
  TCGTGCTCCC TAGTCTGAGG TCATGGCGTA CGGATCTGTC TTAGGCACCA TCTTACTGGG
  TGCCAGATGC CTCCCAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400512	NES08751723	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177291					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400512	NES08751723	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32071548 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	within coordinates
Rr367166	regulatory region 367166	within coordinates
Rr554840	regulatory region 554840	1661 bp distal
Rr554841	regulatory region 554841	517 bp distal
Rr554842	regulatory region 554842	within coordinates
Tssr17251	transcription start site region 17251	1487 bp upstream