rs27177294 SNP Detail

Summary

• ID
  rs27177294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32070398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACTAGA GCTGTCCAGA
  CATGGCGGTG CAGCTGTGTC TTCGCATCTG CATAAGTCCT CAGGAGCGCT CACACTTACA
  CCTCCACACT CCGCCTCGGT GCTTTTCTCG CTCATGGCAA CTGTTAGTTC TTTGTGCCAT
  CTCCAACATT TGGGGCTCTC CCTTCTCTTT TTGGTGATTA GCAACTGTGA CTGGGGTGAC
  R
  TGGTGTCCCT CGAACATCAT GGAGACTTTT GAGTCAGCAT CTACTTGAGG CTCTGTGAAA
  TGCTAGTTAT TCTGAAGTGG CTCAGACCCG GGCCTGGGGG AAGAATATGG TTAGCGGAAC
  AGATAGTACT CATCCGCAGA GGTTTAGGAG GGAGATCTGA CCTGTGGGTC ATGGTCCCAG
  GTACTCATTG CTCCTGATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37400515	NES08751771	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27177294					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400515	NES08751771	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32070398 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	within coordinates
Rr367166	regulatory region 367166	1021 bp upstream
Rr554840	regulatory region 554840	511 bp distal
Rr554841	regulatory region 554841	612 bp proximal
Rr554842	regulatory region 554842	1021 bp proximal