rs27177299 SNP Detail

Summary

• ID
  rs27177299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32069661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGAGCCA CCATGTGTTG
  GGATTCAAAC CTGGGTCCTC TGGAAGGGCA GTCAGGGATT GTAATCACTG AACCATGCCT
  GCAACCCGCA CAACTTTATT TTTGGCAAGG CAGTTGTCTC TTTTTCTGGA ATGTGGTCTG
  GCATCTCGGT GTGTGTGCAG TGTGCAGCGT TTAGATCTGG GTGGCTTGCA GGCCCATCGC
  Y
  GCAGACACGG TTGTTTATGG AACTGTCCAT ACACTCTACC TGCTGTTCTG AAGTACTCCA
  CTAATCACTG TCTACCCTGA CTTTCCTGTT CCACTCTGTT CAGACCTCCA GCCCAGCAGT
  CTTCCCTCCC TCCCCTCTCC TTCCCTTTGA CCTTCTCCAT TTCCCAGCGT CTGGTTGGTA
  CTGCTTTTCT GTCTGCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400520	NES08751803	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177299					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400520	NES08751803	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32069661 () rs orientation: forward

Symbol	Name	Function Class
D2Bwg0886e	DNA segment, Chr 2, Brigham & Women's Genetics 0886 expressed	1470 bp distal
Prrc2b	proline-rich coiled-coil 2B	within coordinates
Rr367166	regulatory region 367166	1758 bp upstream
Rr554840	regulatory region 554840	within coordinates
Rr554841	regulatory region 554841	1349 bp proximal
Rr554842	regulatory region 554842	1758 bp proximal