rs27177321 SNP Detail

Summary

• ID
  rs27177321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32056920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACCCCAG CCCTTGGGAT
  GCTGCCACCC TAATCTAGAA ATTCCCTCGG ACACGCCCAG AGGCTGGTCT CCATGGTGAC
  TCTCACCGGA AACTGTCGAG GGTTGGGAGT CGTTGCTTCC TTTCATTCTA AGGGGGCTCT
  TCTGGGGCTG AGGCAGACTC AGAGAAAACA CGCCCGATGT CACCTGTTCT CCCGGTGTCA
  Y
  TGTGTGATCT TTCTGTGTCT TGGATTAGTC TCTGGTTTCT CAACTCCAGG AATTTTTCTT
  GGGTTTTTAA TTTTATGATT TCTTCCACTC TTGATTTAAT GTGAGGCAGG GGGAGAGGTT
  GAATAAGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGCTG CTAGAGCATA CTTCTGCTTG
  GCTAAGATGT GGGGAGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400548	NES08752121	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177321					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400548	NES08752121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32056920 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr367164	regulatory region 367164	1039 bp upstream
Rr554831	regulatory region 554831	1993 bp distal
Rr554832	regulatory region 554832	1174 bp distal
Rr554833	regulatory region 554833	within coordinates
Rr554834	regulatory region 554834	808 bp proximal
Rr554835	regulatory region 554835	1199 bp proximal
Tssr23465	transcription start site region 23465	1022 bp downstream