rs27177326 SNP Detail

Summary

• ID
  rs27177326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32056215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCTGGG ATTTGAACTC
  AGGACCTTCG GGAGAACAGT CAGTGCTCTT AACCACTGAG CCATCTCTCC AACCCAACAA
  GGCTGTTTTT TACCAAGTAA AGTCAAGTCC AGAGGCAGGC AGCATTGGGA CTCACTGGTC
  CAGCGGTTCT ACCCTCAGAG CTCAGCAGTC TTATCATTAA AAACTGAGTA CTGAGTTAGC
  Y
  ATTGGTGGGC TAGAATGAAT GGCCTGGTGT GGTGGCATCG ACTGCTTTGT GTGGACACCT
  TTTCTTTTCT TTTCTTTTCT TTTCTTTTCT TTTCTTTTCT TTTCCTTTCT TTTCTTTTTT
  TTTTCTTCTT CCGAGACAGG GTTTCTCTGT GTAGCCTTGG CTGTCCTGGA ACTCACTCTG
  TAGACCAGGC TGGCCTCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400553	NES08752155	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177326					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400553	NES08752155	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32056215 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr367164	regulatory region 367164	1744 bp upstream
Rr373004	regulatory region 373004	1924 bp downstream
Rr554831	regulatory region 554831	1288 bp distal
Rr554832	regulatory region 554832	469 bp distal
Rr554833	regulatory region 554833	301 bp proximal
Rr554834	regulatory region 554834	1513 bp proximal
Rr554835	regulatory region 554835	1904 bp proximal
Tssr23465	transcription start site region 23465	1727 bp downstream