rs27177338 SNP Detail

Summary

• ID
  rs27177338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32053112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGGTGG TGTAGGGTCA
  GCAGGCGGAA AGTGAGCCTG ACCTGAGAGG AGTGGCACTG AGAGACGGCT CCCTGGCCGA
  ATCAGCCTGA TCTTGGCAGC CCAGGTCCCA CTGATAAAAG CATGACCCTC ATGGGGGGCG
  GCAGGAACAT TCAAAGCTGG CTGCATTGTG GACGATATGG CTGTTCCCAG TGGTCCAAGG
  Y
  TTTCTTGTCC AGCACTTACT TCTTAGGTGG ATCAGTGTGT TGGATTGACC TGGGTTCTTG
  ATTCTCAAGT TAACTGAGTC TGGTGCCTGT GGAGATCAGA GGATGGGGCT GGGTCCCTTG
  GGACTGCAGT CACAGAGGGA TATGTGCTAT CGTATGGATG CTGGGAACTG AACCCAGGGC
  CTCCACAAGA GCCACAAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37400565	NES08752252	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27177338					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400565	NES08752252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32053112 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr373004	regulatory region 373004	within coordinates
Rr554828	regulatory region 554828	1877 bp distal
Rr554829	regulatory region 554829	632 bp distal
Rr554830	regulatory region 554830	684 bp distal
Rr554831	regulatory region 554831	1412 bp proximal
Rr554832	regulatory region 554832	1950 bp proximal
Tssr17249	transcription start site region 17249	690 bp downstream
Tssr17250	transcription start site region 17250	55 bp downstream