rs27177341 SNP Detail

Summary

• ID
  rs27177341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:32052783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGGTCT CAATGTGTAT
  GTATCTCTGG TTGGCCTGAA ACTCATTGTG TAGACCAGGC TAGCCAGGAA CTCAGAGATG
  CTCCTGCCTC TGCCTCAGGA ATGCTGGGAT TATGCTATGT GCTGCCATTC TGTTTTGTTT
  TGTGTTTTGT TTTGTTTTAA GAAAAAAAAT TTATGTCACA AAAATTTTGT TGTTGTTGCT
  Y
  TTGGGATTGA ACCTTGGTCT GTTGGCCTGA CCCACCCCAG CCACACCCTA GCCCTGGTTG
  CAGCTTTTGT TCTACAAATT ACCCCTCAGC TGGAGTCCTT CTCCTCATAA TGGCCTGAGG
  TCTTCTGAGA AGTGGTGGTG TAGGGTCAGC AGGCGGAAAG TGAGCCTGAC CTGAGAGGAG
  TGGCACTGAG AGACGGCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37400568	NES08752249	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27177341					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400568	NES08752249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32052783 () rs orientation: forward

Symbol	Name	Function Class
Prrc2b	proline-rich coiled-coil 2B	Intron
Rr373004	regulatory region 373004	within coordinates
Rr554828	regulatory region 554828	1548 bp distal
Rr554829	regulatory region 554829	303 bp distal
Rr554830	regulatory region 554830	355 bp distal
Rr554831	regulatory region 554831	1741 bp proximal
Tssr17249	transcription start site region 17249	361 bp downstream
Tssr17250	transcription start site region 17250	266 bp upstream