rs27177451 SNP Detail

Summary

• ID
  rs27177451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31969013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCGGGAAG AGGCCAGCAG
  GGACATTCCT CCGTGGCCAT CCCCCAAATC TCAGGTGCTG AGCAAACGTT ACTGGGCAAG
  TGGCTTTGGG ATTTATAGTC TGCATTCCGA TTCCTTAAGT TAGAGCCTCT GAGGTCCTGG
  GATGCACCCC AGAGATAGCA GGGAGCAGGG AGAAAGATAA CCAGAGTTCC AGTGTTCTCA
  Y
  ACAAAGTCTA TCCAAGCCAT GACAGCACAT GTGTGGGTCA GGAAAACCCA CATGGCCTCA
  GGGGTCAAGG CCGTCCTGCT ATGGAAAGGT ACCCAGAGAG AACACAGAGA GTAACAATAT
  CTGGTCACAC AGCATAGAAC AATAACCCAA CATTGATACC CAGATTTGTA ATCGTGGTAC
  CTGGGGAGAT GGAGCAGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400679	NES08753798	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177451					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400679	NES08753798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31969013 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
Rr370574	regulatory region 370574			within coordinates
Rr554790	regulatory region 554790			24 bp distal
Rr554791	regulatory region 554791			299 bp proximal
Rr554792	regulatory region 554792			970 bp proximal
Rr554793	regulatory region 554793			1629 bp proximal
Tssr23454	transcription start site region 23454			338 bp downstream