rs27177452 SNP Detail

Summary

• ID
  rs27177452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:31968928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGATGG GGGAAGCCGC
  CTTCCGCCCC AAGACAGGAA GTATAGTCTT CAATTGTTCT GTGAGGCCTC AGGCCCTGGC
  TCCAGTTCCG GGAAGAGGCC AGCAGGGACA TTCCTCCGTG GCCATCCCCC AAATCTCAGG
  TGCTGAGCAA ACGTTACTGG GCAAGTGGCT TTGGGATTTA TAGTCTGCAT TCCGATTCCT
  Y
  AAGTTAGAGC CTCTGAGGTC CTGGGATGCA CCCCAGAGAT AGCAGGGAGC AGGGAGAAAG
  ATAACCAGAG TTCCAGTGTT CTCACACAAA GTCTATCCAA GCCATGACAG CACATGTGTG
  GGTCAGGAAA ACCCACATGG CCTCAGGGGT CAAGGCCGTC CTGCTATGGA AAGGTACCCA
  GAGAGAACAC AGAGAGTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37400680	NES08753797	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27177452					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37400680	NES08753797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31968928 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fam78a	family with sequence similarity 78, member A			Intron
				Noncoding-Transcript-Variant
Rr370574	regulatory region 370574			within coordinates
Rr554790	regulatory region 554790			within coordinates
Rr554791	regulatory region 554791			384 bp proximal
Rr554792	regulatory region 554792			1055 bp proximal
Rr554793	regulatory region 554793			1714 bp proximal
Tssr23454	transcription start site region 23454			423 bp downstream