rs27177617 SNP Detail

Summary

• ID
  rs27177617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28457794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGGCTTGA AATCCTCCTC CTCCTCTTCC TCCTCTTCCT
  CCTCCTCCTC CTCTTCCTCT CCAGATTCAA ACATCAGCTG CTCTTTCCCA CGATCAGCCT
  Y
  ACCTGTGTTG GAGAAAAGAG CTGTACACGA AGGAAAGAAG GCTGTGTTCC AACACAGGCT
  TCCTAGGCAG CCCTAGAGTC CCTTCACTGT GACAGGCTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss37410536	NES08775032	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs27177617					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410536	NES08775032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28457794 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13381	predicted gene 13381			within coordinates
Gtf3c5	general transcription factor IIIC, polypeptide 5			Coding-NonSynonymous
				Splice-Site
Rr553837	regulatory region 553837			869 bp distal