rs27177619 SNP Detail

Summary

• ID
  rs27177619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28457481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACAGGA CAATCAGGGC
  TGGGCTGGCT TATACCAAGG CTACCCCAGA CAGTGCCCAA ACCAAAGGGT GGTCTGGCTA
  GCCAAGTTCC TCAGGCCCTC TGTCACTAGA TTCACAAACC CCCTGCCAGG ATGGGTGCCA
  TGGTTTACCA CACCTACCTT GGGTCACCTG CACGGCAATA GGGTTGTCCT CCACCCAGGG
  Y
  ACAAGACAGC ACCAAGCACA GAACACAGCC AGAGCCAGGA CCTCTTGTTA GGACAGCAGC
  TTTGGGAGGA GCCTCAAGGG CCGTCCTCAC TACCATGACC CTATTCTGCT GCTTTGTGAG
  GATGGCTGCT GCTCTCACCT GGTTGCCTGG GAACAGCGCT TCCTCACACG TAATCCAGAA
  TCTCTGTCTC CATCTCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37410538	NES08775027	PERLEGEN	MM_PANEL2	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27177619					SNP	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410538	NES08775027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28457481 () rs orientation: forward

Symbol	Name	Function Class
Gm13381	predicted gene 13381	within coordinates
Gtf3c5	general transcription factor IIIC, polypeptide 5	Intron
Rr553837	regulatory region 553837	556 bp distal