rs27177624 SNP Detail

Summary

• ID
  rs27177624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28456304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCCAACT GCTTATAATA
  AGTGCTAACT GTTCCACTTC TCGAGAATCT TGGCTAGCAA GTGCCACAAA GTGCTTTTGT
  TCTGTGGAGA CAAGTGGCCT TTTCTCAAAC ACACCCAGCA AAACACAAAT CAAAAACAAA
  TCAATACAGG GTGCACTATG CAACAAGACT CAGTGCTGTG ACTCATATGC CAGGTGACCA
  R
  GGCATCAAAC ACCAGTGCTG GCTTTGGGGG AGTTTTATAT TTATTGTACC AAAAGCACTT
  TGATTTACAT GGGAATTCAG GACAGTTACA ATACTTTGCC AAGTGTGGCT AGACTTCAGG
  AAGTCCTTCT AGTCTGTCCA ACCTATGGCA GGAATGGCCA TCGCCCTGGG CTCTGTGTAA
  GTGAGGCCTC CAGAGGGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
ss37410544	NES08775015	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ
rs27177624					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410544	NES08775015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28456304 () rs orientation: forward

Symbol	Name	Function Class
Gm13381	predicted gene 13381	within coordinates
Gtf3c5	general transcription factor IIIC, polypeptide 5	mRNA-UTR
Rr553837	regulatory region 553837	262 bp proximal