rs27177625 SNP Detail

Summary

• ID
  rs27177625
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28455463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCACAGC GCCCTTCAGA
  CACCAGCCTG CAGAACTCAC CCCAAAGACA AAGAGCAGAG GCTTAGATGA CCTAAGTAGT
  CTCACAACTT TGTCATGTAC TTGGTCTAAT TTATCAACTG TGTGTACACG TATGTCGCTG
  GAGTGTGTGT GGGTGTCTTC AGAGGCCAGG GTGGGGGCGC TGGAAAGGAC TAGCAATCAC
  W
  AGGAATCGTG TTGAGGATGG TGGTCAGCTT CATGTATTAA CCTGACCAAT ATGGTACCAT
  TATTTGGCCA AAGTGGACAT GGTAGTGCAC ATCTTTAATC CCAGAACTCA AGAGGCAGAG
  GCAGGAGGAT CTTTATGGGT TCAACATTAG CCTGGTCCAC ACAGTGAGTT CCAGGACACA
  GAGAGCCTGT CTCAAAAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37410545	NES08775112	PERLEGEN	MM_PANEL2	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27177625					SNP	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410545	NES08775112	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28455463 () rs orientation: forward

Symbol	Name	Function Class
Gm13381	predicted gene 13381	within coordinates
Gtf3c5	general transcription factor IIIC, polypeptide 5	794 bp downstream
Rr553837	regulatory region 553837	1103 bp proximal