rs27177626 SNP Detail

Summary

• ID
  rs27177626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28455247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTGAGG GGCAGGTGGA
  TGGGTTCAAG AGAAAATGTT TCCTAAGAAG CAAAGCCCAG CAACCTTGAT AACACGCCAA
  GCAGAACTGC CACCACTCAG GCCAGGCCTG CTGTTGCCAG AGTGCTTGGC ATGGCAAGGG
  CAGTGTCTGC AGTTCCCAGG AGACAGCTTA CAGGATGCAG TGGGCCCAGC GTGGGTCAGC
  R
  AGTGGCCTGG GTGAGTGAGC ACAGCGCCCT TCAGACACCA GCCTGCAGAA CTCACCCCAA
  AGACAAAGAG CAGAGGCTTA GATGACCTAA GTAGTCTCAC AACTTTGTCA TGTACTTGGT
  CTAATTTATC AACTGTGTGT ACACGTATGT CGCTGGAGTG TGTGTGGGTG TCTTCAGAGG
  CCAGGGTGGG GGCGCTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss37410546	NES08775111	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs27177626					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410546	NES08775111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28455247 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	1832 bp upstream
Gm13381	predicted gene 13381	within coordinates
Gtf3c5	general transcription factor IIIC, polypeptide 5	1010 bp downstream
Rr553837	regulatory region 553837	1319 bp proximal
Tssr23278	transcription start site region 23278	1843 bp upstream