rs27177627 SNP Detail

Summary

• ID
  rs27177627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28455033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACAAGG ATACATCTCT
  GTCACACAGC CCGGTAGTGT TGGCCTGCTG CTGACACTGG ATAAATTTGA TTCCAGGGCC
  ACAGCTGGGT GCTCAGAGCC TACAGTCTCC TCAAAGTCTG GGCTGAAGGC AGCAAAGCAG
  ACTGACAGAG GGACCACAAA GACGACAAGC CCCACCAACA CAGATACACT GGGACATAGG
  Y
  GAGGAATTTT AAAGGGTTTG AGGGGCAGGT GGATGGGTTC AAGAGAAAAT GTTTCCTAAG
  AAGCAAAGCC CAGCAACCTT GATAACACGC CAAGCAGAAC TGCCACCACT CAGGCCAGGC
  CTGCTGTTGC CAGAGTGCTT GGCATGGCAA GGGCAGTGTC TGCAGTTCCC AGGAGACAGC
  TTACAGGATG CAGTGGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss37410547	NES08775110	PERLEGEN	MM_PANEL2	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs27177627					SNP	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410547	NES08775110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28455033 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	1618 bp upstream
Gm13381	predicted gene 13381	within coordinates
Gtf3c5	general transcription factor IIIC, polypeptide 5	1224 bp downstream
Rr553837	regulatory region 553837	1533 bp proximal
Tssr23278	transcription start site region 23278	1629 bp upstream