rs27177628 SNP Detail

Summary

• ID
  rs27177628
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28454580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGGCA CCGCAGCTAG
  TCAGGCATAG CCAAGTCTTC CCAGGCCAGC AGCCCCTCCC CTCTGGGAAC CCAAGTTCCC
  AGCTCAGATC ATAGCTCCAC TTGTACCAGA GCAGGTGTGT GTGTGTGTGT GTGTGTGTAC
  AGATCTACGT CCACTAGTGT GTTGGTGTGC CCTGCCCAAT CCAGTGTGCA GGTTTCCATG
  K
  CGCACAGTAG GTATGCAGAT GAGTGGGGGT GGGGGCAGGA GGAAGCTGGA ACACAGCAGA
  GGTGGGGTAG CAGGAAACAC ATTGGGTGTG ATTCTGAGAA CCAGAGCTAA AGGCAGTTCT
  GTACTGGGGA GTGCGGGCTT GAGACAAGGC ATGGGGCCGT GGGCATACAA GTGGCTACTC
  TGTACCCAGC TTGGTCAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37410548	NES08775109	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27177628					SNP	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410548	NES08775109	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28454580 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	1165 bp upstream
Gm13381	predicted gene 13381	within coordinates
Gtf3c5	general transcription factor IIIC, polypeptide 5	1677 bp downstream
Rr553837	regulatory region 553837	1986 bp proximal
Tssr23278	transcription start site region 23278	1176 bp upstream