rs27177629 SNP Detail

Summary

• ID
  rs27177629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28452707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGGCAAG AGCCCCGGAC
  CGAACTGTAA CATCCAGGCT CCAGGAGGGT GACACTGAGG ATTCTCCAGG ATGGTCTCCA
  GGGTCCAAGA AAACAAGACA AGGGCCAGAG AACTAAGGCT GGAGCGTTTG GGTGAGTTGC
  TGGGGCCCCT GTGCAGAGAC CTATGCCCTC TTCCTGCATC TGTTGAGCTT TCTGTGACTC
  R
  TCCTCACACT CCCAAGAAGG GTGGTTAAAG GGCAGATGTT GTAGGCGCCC CAGAAGAGCT
  GGTGCAGCTC CTCAGGGCAC ACAGCGGGTA TGGGTAGGTC TCACCCCTTC TCAGGGGGAG
  CAGGAAATGG AGGGCACTTG GGAGCCAGAG CCCTGATTTG GAACAGACAT TTCAGGTTCC
  TATTTAAGAA CAGGATATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ
ss37410549	NES08775190	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ
rs27177629					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410549	NES08775190	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28452707 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cel	carboxyl ester lipase			Intron
				Noncoding-Transcript-Variant
Gm13381	predicted gene 13381			within coordinates
Rr553836	regulatory region 553836			1908 bp distal
Tssr16964	transcription start site region 16964			1732 bp downstream
Tssr16965	transcription start site region 16965			168 bp downstream
Tssr23271	transcription start site region 23271			1503 bp upstream
Tssr23272	transcription start site region 23272			1468 bp upstream
Tssr23273	transcription start site region 23273			1452 bp upstream
Tssr23274	transcription start site region 23274			1418 bp upstream
Tssr23275	transcription start site region 23275			1355 bp upstream
Tssr23276	transcription start site region 23276			273 bp upstream
Tssr23277	transcription start site region 23277			243 bp upstream
Tssr23278	transcription start site region 23278			678 bp downstream