rs27177630 SNP Detail

Summary

• ID
  rs27177630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28451836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAACATT GCCATAGGTT
  TCTGAGATCT CTCTCTCCTG CCCCCACCTC TCCCCACTGC CTTCCTAGAT GGGCATGGAA
  CTGGTGGCCC CATGCCCGGA TCTTCACAGG GCCAATCAGT ACTGCTATTT GGTGTCCAGC
  TCAACCCAAG GTCTGGAGTC AGGTCCTCAT CTGCCCACTA TCCCCGCACT TTCCCACCGC
  R
  AGTTGTTTTG TTGAGATGAG GCTGTCTAAC CTCTGTGCAG TGCATGTCCC CTCCTGTCCT
  GCCTGCATCA GTCCAGGGCA CATGCAGGAG CAGCTCCGCT TACTTGGCAG TGGTGATAGT
  ATGGCCTCCT GCTTCTCCTC TGTGCAAGGT TTCAGGTAGG GGGAAGTAGG TGGCCTGTAG
  CTGCAAGCCC AAGCTGGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss37410550	NES08775223	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs27177630					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410550	NES08775223	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28451836 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	373 bp upstream
Rr553836	regulatory region 553836	1037 bp distal
Tssr16963	transcription start site region 16963	1225 bp downstream
Tssr16964	transcription start site region 16964	861 bp downstream
Tssr16965	transcription start site region 16965	685 bp upstream
Tssr23266	transcription start site region 23266	1962 bp upstream
Tssr23267	transcription start site region 23267	1932 bp upstream
Tssr23268	transcription start site region 23268	1249 bp upstream
Tssr23269	transcription start site region 23269	1217 bp upstream
Tssr23270	transcription start site region 23270	1145 bp upstream
Tssr23271	transcription start site region 23271	632 bp upstream
Tssr23272	transcription start site region 23272	597 bp upstream
Tssr23273	transcription start site region 23273	581 bp upstream
Tssr23274	transcription start site region 23274	547 bp upstream
Tssr23275	transcription start site region 23275	484 bp upstream
Tssr23276	transcription start site region 23276	587 bp downstream
Tssr23277	transcription start site region 23277	609 bp downstream
Tssr23278	transcription start site region 23278	1549 bp downstream