rs27177631 SNP Detail

Summary

• ID
  rs27177631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28451559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGCTCCA GGGTGCTAGC
  AGGTCCTCTG CCAAGTGCTG GAGGGGCTGA TTCCCTTTCC TCCCAGACCC TGGCACATCC
  TCCTTCAGGT AGCTGAGGCT ACTTCCGCCC ACGTCTGCTA AGCTGGAGTG ACAGTCTAGA
  TCTCGGCTGA GACCTGGGGC CTCAATTTCC CCATAGGTAA GATGGGCCAC CGCACCTTCC
  Y
  CTAAGGCTTG ATGGCTGTCA GAGGGAAGGC CTGTCCAACT ACAGACAGTG GTGGATGCTC
  AGTGCTTCCA GAGGGTTTCT AACATTGCCA TAGGTTTCTG AGATCTCTCT CTCCTGCCCC
  CACCTCTCCC CACTGCCTTC CTAGATGGGC ATGGAACTGG TGGCCCCATG CCCGGATCTT
  CACAGGGCCA ATCAGTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37410551	NES08775222	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27177631					SNP	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410551	NES08775222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28451559 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	650 bp upstream
Rr553836	regulatory region 553836	760 bp distal
Tssr16963	transcription start site region 16963	948 bp downstream
Tssr16964	transcription start site region 16964	584 bp downstream
Tssr16965	transcription start site region 16965	962 bp upstream
Tssr23264	transcription start site region 23264	1908 bp upstream
Tssr23265	transcription start site region 23265	1866 bp upstream
Tssr23266	transcription start site region 23266	1685 bp upstream
Tssr23267	transcription start site region 23267	1655 bp upstream
Tssr23268	transcription start site region 23268	972 bp upstream
Tssr23269	transcription start site region 23269	940 bp upstream
Tssr23270	transcription start site region 23270	868 bp upstream
Tssr23271	transcription start site region 23271	355 bp upstream
Tssr23272	transcription start site region 23272	320 bp upstream
Tssr23273	transcription start site region 23273	304 bp upstream
Tssr23274	transcription start site region 23274	270 bp upstream
Tssr23275	transcription start site region 23275	207 bp upstream
Tssr23276	transcription start site region 23276	864 bp downstream
Tssr23277	transcription start site region 23277	886 bp downstream
Tssr23278	transcription start site region 23278	1826 bp downstream