rs27177632 SNP Detail

Summary

• ID
  rs27177632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28450856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCATCA CAGGCAGGTT
  GTGGGACACT GAAAGGGGCA GACAGGGACT TCAGACACCA ACAGGTCCTC TCCCCAGACA
  GCTCAGTAGC CCTGTTGGAG CAGGTACTCA GGCAGGGCTG TGAGGATCAG CAGTTGGCAC
  CCCCTCCTCG CCTCAGTGCT GATTTCAGGG CTGTTGAGCT TGACGACACC AAATGGATCC
  Y
  AGACCAGGGC TTGAAGTTCT GGGGTGGGGG TGGGGTGGGG TTCTCTGGGA AACTGGGATC
  CATACCCTGC TTCCTGCCCT GGGGCACCCA GATATTGAGG TAGAGGCAGT CTTCTTGCCC
  ATAGGTGTTG TCCTGGGTGA TGGTGGCCTG TAGGCATCGT TTCTTGAAGT TTGTAGCCTT
  CAGCGTCCCT ACAGTGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37410552	NES08775221	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27177632					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410552	NES08775221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28450856 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	1353 bp upstream
Rr553836	regulatory region 553836	57 bp distal
Tssr16963	transcription start site region 16963	245 bp downstream
Tssr16964	transcription start site region 16964	104 bp upstream
Tssr16965	transcription start site region 16965	1665 bp upstream
Tssr23262	transcription start site region 23262	1449 bp upstream
Tssr23263	transcription start site region 23263	1407 bp upstream
Tssr23264	transcription start site region 23264	1205 bp upstream
Tssr23265	transcription start site region 23265	1163 bp upstream
Tssr23266	transcription start site region 23266	982 bp upstream
Tssr23267	transcription start site region 23267	952 bp upstream
Tssr23268	transcription start site region 23268	269 bp upstream
Tssr23269	transcription start site region 23269	237 bp upstream
Tssr23270	transcription start site region 23270	165 bp upstream
Tssr23271	transcription start site region 23271	336 bp downstream
Tssr23272	transcription start site region 23272	360 bp downstream
Tssr23273	transcription start site region 23273	390 bp downstream
Tssr23274	transcription start site region 23274	420 bp downstream
Tssr23275	transcription start site region 23275	484 bp downstream
Tssr23276	transcription start site region 23276	1567 bp downstream
Tssr23277	transcription start site region 23277	1589 bp downstream