rs27177633 SNP Detail

Summary

• ID
  rs27177633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28450420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTGCCTCA GGCTCCCCTG TCCCATAGTT TAGCTTTAGT
  CCCCCAACTC TGTGAAGAAG GTGCCTCCCC TCGGCTGTCA ACTTAGAAGC TTCTGAAGTG
  Y
  GTCTCTCCGC ACAGGGTCCT GTGCATTCAC TATTCCCGCT CTTACAGTCG GAGGCTCCGA
  CATACCTGGA AGGTTAGCAT CCCCGGTGCT AAGGAAACCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37410553	NES08775220	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27177633					SNP	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37410553	NES08775220	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28450420 () rs orientation: forward

Symbol	Name	Function Class
Cel	carboxyl ester lipase	within coordinates
Gm13381	predicted gene 13381	1789 bp upstream
Rr553836	regulatory region 553836	358 bp proximal
Tssr16963	transcription start site region 16963	146 bp upstream
Tssr16964	transcription start site region 16964	540 bp upstream
Tssr23262	transcription start site region 23262	1013 bp upstream
Tssr23263	transcription start site region 23263	971 bp upstream
Tssr23264	transcription start site region 23264	769 bp upstream
Tssr23265	transcription start site region 23265	727 bp upstream
Tssr23266	transcription start site region 23266	546 bp upstream
Tssr23267	transcription start site region 23267	516 bp upstream
Tssr23268	transcription start site region 23268	113 bp downstream
Tssr23269	transcription start site region 23269	179 bp downstream
Tssr23270	transcription start site region 23270	250 bp downstream
Tssr23271	transcription start site region 23271	772 bp downstream
Tssr23272	transcription start site region 23272	796 bp downstream
Tssr23273	transcription start site region 23273	826 bp downstream
Tssr23274	transcription start site region 23274	856 bp downstream
Tssr23275	transcription start site region 23275	920 bp downstream