rs27178184 SNP Detail

Summary

• ID
  rs27178184
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33443182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGTTCT TAAACATCGA
  GCCATCTCTC CAGCACCCAG CATTCAAGCT TCAATTGCTT TTCTCCATAG TTGCCTACAA
  AAAGGTAAAA TTGAAAGGAA ATCTAAATAT ACGTCCAGTT CGAGAAGTGT AGAAAATGAT
  TCAACCTTAC TGAAAACTAG CAAGGAAGAC GCAGGGATAT CAGTTATGAC TTATCAACTC
  K
  CCGCAGAGTA CATAAAATAA TCACAATCCC AACCAAAACT TTAAAATTAT TTTTTAATGA
  ATTATAAAAC CCATATAGAA AATCCGAAGG CCAGTTGAGT GGTGCTCCCC CTGGATGAGG
  GGGAGGACCC GCTCTGGATG TGCTCAGACG TGCTCTGTAC ATTAGGGACT GGCAGTGGTT
  AAGGCTGCAG TGCCACTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37397503	NES08758530	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27178184					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37397503	NES08758530	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33443182 () rs orientation: forward

Symbol	Name	Function Class
Gm39789	predicted gene, 39789	within coordinates
Rr555268	regulatory region 555268	288 bp distal